alleleTools.plot.plot_ikmb_coverage module

alleleTools.plot.plot_ikmb_coverage.call_function(args)

alleleTools.plot.plot_ikmb_coverage.read_reports_asdf(files: list, allele_parser: AlleleParser) → DataFrame

Parses a list of .json files as reports and returns a dataframe with all the genotyped genes per sample

alleleTools.plot.plot_ikmb_coverage.setup_parser(subparsers)

Set up the argument parser for the consensus command.

Parameters:

subparsers – The subparsers object to add this command to.

Returns:

The configured parser for consensus.

Return type:

argparse.ArgumentParser